The first step is to select the file to be analysed. This file can be specified on the command line used to run this program (e.g. analysis run001
Next, select the menu item "Analysis", and make selections below this to choose the analysis method you want. Once an analysis method is chosen, you are returned to the main menu.
The next step is usually "View/Required" (select "View" from the main menu, then select "Required") to see which parameters must be set for the analysis method you selected. This will also show you the key stroke sequences to type to set each parameter.
Once all parameters have been set appropriately, select "Go" to begin the analysis.